Uses of Class
ij.ImageStack

Packages that use ImageStack
ij   
ij.plugin   
ij.plugin.filter   
ij.process   
ij.util   
 

Uses of ImageStack in ij
 

Subclasses of ImageStack in ij
 class VirtualStack
          This class represents an array of disk-resident images.
 

Methods in ij that return ImageStack
 ImageStack ImagePlus.createEmptyStack()
          Returns an empty image stack that has the same width, height and color table as this image.
 ImageStack ImagePlus.getImageStack()
          Returns the base image stack.
 ImageStack ImagePlus.getStack()
          Returns the image stack.
 ImageStack VirtualStack.sortDicom(java.lang.String[] strings, java.lang.String[] info, int maxDigits)
           
 

Methods in ij with parameters of type ImageStack
 void ImagePlus.setStack(ImageStack stack)
          Replaces the image with the specified stack and updates the display.
 void ImagePlus.setStack(ImageStack stack, int nChannels, int nSlices, int nFrames)
           
 void ImagePlus.setStack(java.lang.String title, ImageStack newStack)
          Replaces the image with the specified stack and updates the display.
 

Constructors in ij with parameters of type ImageStack
ImagePlus(java.lang.String title, ImageStack stack)
          Constructs an ImagePlus from a stack.
 

Uses of ImageStack in ij.plugin
 

Subclasses of ImageStack in ij.plugin
 class AVI_Reader
           ImageJ Plugin for reading an AVI file into an image stack (one slice per video frame) Version 2008-07-03 by Michael Schmid, based on a plugin by Daniel Marsh and Wayne Rasband Restrictions and Notes: - Only few formats supported: - uncompressed 8 bit with palette (=LUT) - uncompressed 8 & 16 bit grayscale - uncompressed 24 & 32 bit RGB (alpha channel ignored) - uncompressed 32 bit AYUV (alpha channel ignored) - various YUV 4:2:2 compressed formats - png or jpeg-encoded individual frames.
 class FileInfoVirtualStack
          This plugin opens a multi-page TIFF file as a virtual stack.
 class ListVirtualStack
          This plugin opens images specified by list of file paths as a virtual stack.
 

Methods in ij.plugin that return ImageStack
 ImageStack StackCombiner.combineHorizontally(ImageStack stack1, ImageStack stack2)
           
 ImageStack StackCombiner.combineVertically(ImageStack stack1, ImageStack stack2)
           
 ImageStack CanvasResizer.expandStack(ImageStack stackOld, int wNew, int hNew, int xOff, int yOff)
           
 ImageStack StackMaker.makeStack(ImageProcessor ip, int w, int h, int b)
           
 ImageStack AVI_Reader.makeStack(java.lang.String path, int firstFrameNumber, int lastFrameNumber, boolean isVirtual, boolean convertToGray, boolean flipVertical)
          Create an ImageStack from an avi file with given path.
 ImageStack RGBStackMerge.mergeStacks(int w, int h, int d, ImageStack red, ImageStack green, ImageStack blue, boolean keep)
           
 ImageStack PGM_Reader.openFile(java.lang.String path)
           
 ImageStack Straightener.straightenStack(ImagePlus imp, Roi roi, int width)
           
 

Methods in ij.plugin with parameters of type ImageStack
 ImageStack StackCombiner.combineHorizontally(ImageStack stack1, ImageStack stack2)
           
 ImageStack StackCombiner.combineVertically(ImageStack stack1, ImageStack stack2)
           
 ImagePlus RGBStackMerge.createComposite(int w, int h, int d, ImageStack[] stacks, boolean keep)
          Deprecated; replaced by mergeChannels().
 ImageStack CanvasResizer.expandStack(ImageStack stackOld, int wNew, int hNew, int xOff, int yOff)
           
 ImageStack RGBStackMerge.mergeStacks(int w, int h, int d, ImageStack red, ImageStack green, ImageStack blue, boolean keep)
           
 boolean StackReducer.showDialog(ImageStack stack)
           
 

Uses of ImageStack in ij.plugin.filter
 

Fields in ij.plugin.filter declared as ImageStack
 ImageStack RGBStackSplitter.blue
          These are the three stacks created by the split(ImageStack) method.
 ImageStack RGBStackSplitter.green
          These are the three stacks created by the split(ImageStack) method.
 ImageStack RGBStackSplitter.red
          These are the three stacks created by the split(ImageStack) method.
 

Methods in ij.plugin.filter with parameters of type ImageStack
 void RGBStackSplitter.split(ImageStack rgb, boolean keepSource)
          Splits the specified RGB stack into three 8-bit grayscale stacks.
 

Uses of ImageStack in ij.process
 

Methods in ij.process that return ImageStack
 ImageStack StackProcessor.crop(int x, int y, int width, int height)
          Crops the stack to the specified rectangle.
 ImageStack FHT.getComplexTransform()
          Converts this FHT to a complex Fourier transform and returns it as a two slice stack.
 ImageStack ColorProcessor.getHSBStack()
          Returns an ImageStack with three 8-bit slices, representing hue, saturation and brightness
 ImageStack StackProcessor.resize(int newWidth, int newHeight)
          Creates a new stack with dimensions 'newWidth' x 'newHeight'.
 ImageStack StackProcessor.resize(int newWidth, int newHeight, boolean averageWhenDownsizing)
           
 ImageStack StackProcessor.rotateLeft()
           
 ImageStack StackProcessor.rotateRight()
           
 

Methods in ij.process with parameters of type ImageStack
 void StackProcessor.copyBits(ImageStack src, int xloc, int yloc, int mode)
           
 

Constructors in ij.process with parameters of type ImageStack
StackProcessor(ImageStack stack, ImageProcessor ip)
          Constructs a StackProcessor from a stack.
 

Uses of ImageStack in ij.util
 

Methods in ij.util that return ImageStack
static ImageStack DicomTools.sort(ImageStack stack)
          Sorts a DICOM stack by image number.
 

Methods in ij.util with parameters of type ImageStack
static double DicomTools.getVoxelDepth(ImageStack stack)
          Calculates the voxel depth of the specified DICOM stack based on the distance between the first and last slices.
static ImageStack DicomTools.sort(ImageStack stack)
          Sorts a DICOM stack by image number.