The entire SCOP hierarchy.
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__init__(self,
cla_handle=None,
des_handle=None,
hie_handle=None,
dir_path=None,
db_handle=None,
version=None)
Build the SCOP hierarchy from the SCOP parsable files, or a sql
backend. |
source code
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getDomainBySid(self,
sid)
Return a domain from its sid |
source code
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getNodeBySunid(self,
sunid)
Return a node from its sunid |
source code
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getDomains(self)
Returns an ordered tuple of all SCOP Domains |
source code
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write_hie(self,
handle)
Build an HIE SCOP parsable file from this object |
source code
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write_des(self,
handle)
Build a DES SCOP parsable file from this object |
source code
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write_cla(self,
handle)
Build a CLA SCOP parsable file from this object |
source code
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getDomainFromSQL(self,
sunid=None,
sid=None)
Load a node from the SQL backend using sunid or sid |
source code
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getAscendentFromSQL(self,
node,
type)
Get ascendents using SQL backend |
source code
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write_hie_sql(self,
handle)
Write HIE data to SQL database |
source code
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write_cla_sql(self,
handle)
Write CLA data to SQL database |
source code
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write_des_sql(self,
handle)
Write DES data to SQL database |
source code
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Inherited from object :
__delattr__ ,
__format__ ,
__getattribute__ ,
__hash__ ,
__new__ ,
__reduce__ ,
__reduce_ex__ ,
__repr__ ,
__setattr__ ,
__sizeof__ ,
__str__ ,
__subclasshook__
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