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General mechanisms to access applications in Biopython.
This module is not intended for direct use. It provides the basic objects which are subclassed by our command line wrappers, such as:
These modules provide wrapper classes for command line tools to help you construct command line strings by setting the values of each parameter. The finished command line strings are then normally invoked via the built-in Python module subprocess.
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ApplicationError Raised when an application returns a non-zero exit status. |
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AbstractCommandline Generic interface for constructing command line strings. |
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_AbstractParameter A class to hold information about a parameter for a commandline. |
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_Option Represent an option that can be set for a program. |
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_Switch Represent an optional argument switch for a program. |
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_Argument Represent an argument on a commandline. |
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_re_prop_name = re.compile(r'
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_reserved_names =
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_local_reserved_names =
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__package__ =
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Escape filenames with spaces by adding quotes (PRIVATE). Note this will not add quotes if they are already included: >>> print _escape_filename('example with spaces') "example with spaces" >>> print _escape_filename('"example with spaces"') "example with spaces" |
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_reserved_names
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