Writes SeqRecords into seqXML file.
SeqXML requires the sequence alphabet be explicitly RNA, DNA or
protein, i.e. an instance or subclass of Bio.Alphapet.RNAAlphabet,
Bio.Alphapet.DNAAlphabet or Bio.Alphapet.ProteinAlphabet.
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__init__(self,
handle,
source=None,
source_version=None,
species=None,
ncbiTaxId=None)
Create Object and start the xml generator. |
source code
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_write_species(self,
record)
Write the species if given. |
source code
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_write_description(self,
record)
Write the description if given. |
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_write_dbxrefs(self,
record)
Write all database cross references. |
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_write_properties(self,
record)
Write all annotations that are key value pairs with values of a
primitive type or list of primitive types. |
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Inherited from Interfaces.SequentialSequenceWriter :
write_file ,
write_records
Inherited from Interfaces.SequenceWriter :
clean
Inherited from object :
__delattr__ ,
__format__ ,
__getattribute__ ,
__hash__ ,
__new__ ,
__reduce__ ,
__reduce_ex__ ,
__repr__ ,
__setattr__ ,
__sizeof__ ,
__str__ ,
__subclasshook__
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