Class representing approximate score distribution for a given
motif.
Utilizes a dynamic programming approch to calculate the distribution
of scores with a predefined precision. Provides a number of methods for
calculating thresholds for motif occurences.
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__init__(self,
motif,
precision=1000)
x.__init__(...) initializes x; see help(type(x)) for signature |
source code
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threshold_fpr(self,
fpr)
Approximate the log-odds threshold which makes the type I error
(false positive rate). |
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threshold_fnr(self,
fnr)
Approximate the log-odds threshold which makes the type II error
(false negative rate). |
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threshold_balanced(self,
rate_proportion=1.0,
return_rate=False)
Approximate the log-odds threshold which makes FNR equal to FPR times
rate_proportion |
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Inherited from object :
__delattr__ ,
__format__ ,
__getattribute__ ,
__hash__ ,
__new__ ,
__reduce__ ,
__reduce_ex__ ,
__repr__ ,
__setattr__ ,
__sizeof__ ,
__str__ ,
__subclasshook__
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