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This module provides code to work with the standalone version of AlignACE, for motif search in DNA sequences.
AlignACE homepage:
http://atlas.med.harvard.edu/
AlignACE Citations:
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae, Hughes, JD, Estep, PW, Tavazoie S, & GM Church, Journal of Molecular Biology 2000 Mar 10;296(5):1205-14.
Finding DNA Regulatory Motifs within Unaligned Non-Coding Sequences Clustered by Whole-Genome mRNA Quantitation, Roth, FR, Hughes, JD, Estep, PE & GM Church, Nature Biotechnology 1998 Oct;16(10):939-45.
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AlignAceCommandline Create a commandline for the AlignAce program. |
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CompareAceCommandline Create a commandline for the CompareAce program. |
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