__init__(self,
PERMISSIVE=True,
get_header=False,
structure_builder=None,
QUIET=False)
(Constructor)
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The PDB parser call a number of standard methods in an aggregated
StructureBuilder object. Normally this object is instanciated by the
PDBParser object itself, but if the user provides his own
StructureBuilder object, the latter is used instead.
Arguments:
o PERMISSIVE - Evaluated as a Boolean. If false, exceptions in
constructing the SMCRA data structure are fatal. If true (DEFAULT), the
exceptions are caught, but some residues or atoms will be missing. THESE
EXCEPTIONS ARE DUE TO PROBLEMS IN THE PDB FILE!.
o structure_builder - an optional user implemented StructureBuilder
class.
o QUIET - Evaluated as a Boolean. If true, warnings issued in
constructing the SMCRA data will be supressed. If false (DEFAULT), they
will be shown. These warnings might be indicative of problems in the PDB
file!
- Overrides:
object.__init__
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