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Bio.SeqIO parser for the ABI format.
ABI is the format used by Applied Biosystem's sequencing machines to store sequencing results.
For more details on the format specification, visit: http://www.appliedbiosystem.com/support/software_community/ABIF_File_Format.pdf
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_EXTRACT =
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_SPCTAGS =
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_BYTEFMT =
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_HEADFMT =
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_DIRFMT =
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__package__ =
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Trims the sequence using Richard Mott's modified trimming algorithm. seq_record - SeqRecord object to be trimmed. Trimmed bases are determined from their segment score, which is a cumulative sum of each base's score. Base scores are calculated from their quality values. More about the trimming algorithm: http://www.phrap.org/phredphrap/phred.html http://www.clcbio.com/manual/genomics/Quality_abif_trimming.html |
Returns single data value. elem_code - What kind of data elem_num - How many data points raw_data - abi file object from which the tags would be unpacked |
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_EXTRACT
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_SPCTAGS
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_BYTEFMT
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