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MEMEMotif A subclass of Motif used in parsing MEME (and MAST) output. |
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MEMEInstance A class describing the instances of a MEME motif, and the data thereof. |
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MEMERecord A class for holding the results of a MEME run. |
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Parses the text output of the MEME program into MEME.Record object. Example: >>> f = open("meme.output.txt") >>> from Bio.Motif.Parsers import MEME >>> record = MEME.read(f) >>> for motif in record.motifs: ... for instance in motif.instances: ... print instance.motif_name, instance.sequence_name, instance.strand, instance.pvalue |
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