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object --+ | Interfaces.AlignmentIterator --+ | PhylipIterator
Reads a Phylip alignment file returning a MultipleSeqAlignment iterator.
Record identifiers are limited to at most 10 characters.
It only copes with interlaced phylip files! Sequential files won't work where the sequences are split over multiple lines.
For more information on the file format, please see: http://evolution.genetics.washington.edu/phylip/doc/sequence.html http://evolution.genetics.washington.edu/phylip/doc/main.html#inputfiles
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Inherited from Inherited from |
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id_width = 10
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Inherited from |
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Extracts the sequence ID from a Phylip line, returning a tuple containing: (sequence_id, sequence_residues) The first 10 characters in the line are are the sequence id, the remainder are sequence data. |
Return the next alignment in the file. This method should be replaced by any derived class to do something useful.
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