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Connect with a BioSQL database and load Biopython like objects from it.
This provides interfaces for loading biological objects from a relational database, and is compatible with the BioSQL standards.
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DBServer Represents a BioSQL database continaing namespaces (sub-databases). |
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Adaptor | |||
BioSeqDatabase Represents a namespace (sub-database) within the BioSQL database. |
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_POSTGRES_RULES_PRESENT = False
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_allowed_lookups =
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__package__ =
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Main interface for loading a existing BioSQL-style database. This function is the easiest way to retrieve a connection to a database, doing something like: >>> from BioSeq import BioSeqDatabase >>> server = BioSeqDatabase.open_database(user="root", db="minidb") the various options are: driver -> The name of the database driver to use for connecting. The driver should implement the python DB API. By default, the MySQLdb driver is used. user -> the username to connect to the database with. password, passwd -> the password to connect with host -> the hostname of the database database or db -> the name of the database |
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_allowed_lookups
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