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object --+ | Application.AbstractCommandline --+ | DialignCommandline
Command line wrapper for the multiple alignment program DIALIGN2-2.
http://bibiserv.techfak.uni-bielefeld.de/dialign/welcome.html
Example:
To align a FASTA file (unaligned.fasta) with the output files names aligned.* including a FASTA output file (aligned.fa), use:
>>> from Bio.Align.Applications import DialignCommandline >>> dialign_cline = DialignCommandline(input="unaligned.fasta", ... fn="aligned", fa=True) >>> print dialign_cline dialign2-2 -fa -fn aligned unaligned.fasta
You would typically run the command line with dialign_cline() or via the Python subprocess module, as described in the Biopython tutorial.
Citation:
B. Morgenstern (2004). DIALIGN: Multiple DNA and Protein Sequence Alignment at BiBiServ. Nucleic Acids Research 32, W33-W36.
Last checked against version: 2.2
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Create a new instance of a command line wrapper object.
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