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test_hw_pop(self,
pop_pos,
test_type=' probability ' ) |
source code
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test_hw_global(self,
test_type=' deficiency ' ,
enum_test=True,
dememorization=10000,
batches=20,
iterations=5000) |
source code
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test_ld_all_pair(self,
locus1,
locus2,
dememorization=10000,
batches=20,
iterations=5000) |
source code
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get_genotype_count(self,
pop_pos,
locus_name)
Returns the genotype counts for a certain population and locus |
source code
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get_fis(self,
pop_pos,
locus_name)
Returns the Fis for a certain population and locus |
source code
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get_alleles(self,
pop_pos,
locus_name)
Returns the alleles for a certain population and locus. |
source code
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get_alleles_all_pops(self,
locus_name)
Returns the alleles for a certain population and locus. |
source code
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get_allele_frequency(self,
pop_pos,
locus_name) |
source code
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calc_ibd(self,
is_diplo=True,
stat=' a ' ,
scale=' Log ' ,
min_dist=1e-05) |
source code
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Inherited from object :
__delattr__ ,
__format__ ,
__getattribute__ ,
__hash__ ,
__new__ ,
__reduce__ ,
__reduce_ex__ ,
__repr__ ,
__setattr__ ,
__sizeof__ ,
__str__ ,
__subclasshook__
|