Package Bio :: Package Affy :: Module CelFile :: Class CelParser
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Class CelParser

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object --+
         |
        CelParser

Takes a handle to an Affymetrix cel file, parses the file and returns an instance of a CelRecord

This class needs error handling.

This class is DEPRECATED; please use the read() function in this module instead.

Instance Methods [hide private]
 
__init__(self, handle=None)
Usually load the class with the cel file (not file name) as an argument.
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parse(self, handle)
Takes a handle to a cel file, parses it and stores it in the three arrays.
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__call__(self)
Returns the parsed data as a CelRecord.
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Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, handle=None)
(Constructor)

source code 

Usually load the class with the cel file (not file name) as an argument.

Overrides: object.__init__

parse(self, handle)

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Takes a handle to a cel file, parses it and stores it in the three arrays.

There is more information in the cel file that could be retrieved and stored in CelRecord. The chip type should be a priority.