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object --+ | Interfaces.AlignmentWriter --+ | NexusWriter
Nexus alignment writer.
Note that Nexus files are only expected to hold ONE alignment matrix.
You are expected to call this class via the Bio.AlignIO.write() or Bio.SeqIO.write() functions.
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Use this to write an entire file containing the given alignments. alignments - A list or iterator returning MultipleSeqAlignment objects. This should hold ONE and only one alignment.
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Returns 'protein', 'dna', 'rna' based on the alphabet (PRIVATE). Raises an exception if this is not possible. |
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