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object --+ | Reaction
Abstraction for a biochemical transformation. This class represents a (potentially reversible) biochemical transformation of the type: a S1 + b S2 + ... --> c P1 + d P2 + ... where - a, b, c, d ... are positive numeric stochiometric coefficients, - S1, S2, ... are substrates - P1, P2, ... are products A Reaction should be viewed as the net result of one or more individual reaction steps, where each step is potentially facilitated by a different catalyst. Support for 'Reaction algebra' will be added at some point in the future. Attributes: reactants -- map of involved species to their stochiometric coefficients: reactants[S] = stochiometric constant for S catalysts -- list of tuples of catalysts required for this reaction reversible -- true iff reaction is reversible data -- reference to arbitrary additional data Invariants: for all S in reactants: reactants[S] != 0 for all C in catalysts: catalysts[C] != 0
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Inherited from |
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Initializes a new Reaction object.
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Returns a hashcode for self.
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Returns a debugging string representation of self.
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Returns a string representation of self.
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