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Classes corresponding to phyloXML elements.
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PhyloXMLWarning Warning for non-compliance with the phyloXML specification. |
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PhyloElement Base class for all PhyloXML objects. |
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Phyloxml Root node of the PhyloXML document. |
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Other Container for non-phyloXML elements in the tree. |
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Phylogeny A phylogenetic tree. |
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Clade Describes a branch of the current phylogenetic tree. |
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Accession Captures the local part in a sequence identifier. |
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Annotation The annotation of a molecular sequence. |
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BinaryCharacters The names and/or counts of binary characters present, gained, and lost at the root of a clade. |
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BranchColor Indicates the color of a clade when rendered graphically. |
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CladeRelation Expresses a typed relationship between two clades. |
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Confidence A general purpose confidence element. |
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Date A date associated with a clade/node. |
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Distribution Geographic distribution of the items of a clade (species, sequences). |
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DomainArchitecture Domain architecture of a protein. |
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Events Events at the root node of a clade (e.g. |
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Id A general-purpose identifier element. |
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MolSeq Store a molecular sequence. |
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Point Geographic coordinates of a point, with an optional altitude. |
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Polygon A polygon defined by a list of 'Points' (used by element 'Distribution'). |
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Property A typed and referenced property from an external resources. |
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ProteinDomain Represents an individual domain in a domain architecture. |
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Reference Literature reference for a clade. |
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Sequence A molecular sequence (Protein, DNA, RNA) associated with a node. |
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SequenceRelation Express a typed relationship between two sequences. |
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Taxonomy Describe taxonomic information for a clade. |
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Uri A uniform resource identifier. |
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