A collection of pre-processing functions

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Documentation for package ‘preprocessCore’ version 1.6.0

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colSummarizeAvg Summarize the column of matrices
colSummarizeAvgLog Summarize the column of matrices
colSummarizeBiweight Summarize the column of matrices
colSummarizeBiweightLog Summarize the column of matrices
colSummarizeLogAvg Summarize the column of matrices
colSummarizeLogMedian Summarize the column of matrices
colSummarizeMedian Summarize the column of matrices
colSummarizeMedianLog Summarize the column of matrices
colSummarizeMedianpolish Summarize the column of matrices
colSummarizeMedianpolishLog Summarize the column of matrices
convert.group.labels Summarize columns when divided into groups of rows
normalize.AffyBatch.quantiles.robust Robust Quantile Normalization
normalize.quantiles Quantile Normalization
normalize.quantiles.determine.target Quantile Normalization using a specified target distribution vector
normalize.quantiles.in.blocks Quantile Normalization carried out separately within blocks of rows
normalize.quantiles.robust Robust Quantile Normalization
normalize.quantiles.use.target Quantile Normalization using a specified target distribution vector
rcModelMedianPolish Fit row-column model to a matrix
rcModelPLM Fit row-column model to a matrix
rcModelPLMd Fit robust row-column models to a matrix
rcModelPLMr Fit robust row-column models to a matrix
rcModelPLMrc Fit robust row-column models to a matrix
rcModelPLMrr Fit robust row-column models to a matrix
rcModelWPLM Fit row-column model to a matrix
rcModelWPLMr Fit robust row-column models to a matrix
rcModelWPLMrc Fit robust row-column models to a matrix
rcModelWPLMrr Fit robust row-column models to a matrix
rma.background.correct RMA Background Correction
subColSummarizeAvg Summarize columns when divided into groups of rows
subColSummarizeAvgLog Summarize columns when divided into groups of rows
subColSummarizeBiweight Summarize columns when divided into groups of rows
subColSummarizeBiweightLog Summarize columns when divided into groups of rows
subColSummarizeLogAvg Summarize columns when divided into groups of rows
subColSummarizeLogMedian Summarize columns when divided into groups of rows
subColSummarizeMedian Summarize columns when divided into groups of rows
subColSummarizeMedianLog Summarize columns when divided into groups of rows
subColSummarizeMedianpolish Summarize columns when divided into groups of rows
subColSummarizeMedianpolishLog Summarize columns when divided into groups of rows