▼CASTBase | |
CASTNode | Abstract Syntax Trees for mathematical expressions |
▼CCompBase | |
CExternalModelDefinition | comp
A reference to an externally-defined model |
▼CSBaseRef | comp
Base class for references to objects |
CDeletion | comp
Deletion of an object from a submodel |
CPort | comp
An interface to be used in composition |
▼CReplacing | comp
Convenience class |
CReplacedBy | comp
Indicates an object replaced by another |
CReplacedElement | comp
Indicates an object replaces another |
CSubmodel | comp
A model instance inside another model |
CCompPkgNamespaces | comp
SBMLNamespaces extension for the package |
CConversionOption | A single configuration setting for an SBML converter |
CConversionProperties | Set of configuration option values for a converter |
CCVTerm | A MIRIAM-compliant controlled vocabulary term |
CDate | A MIRIAM-compliant date representation |
CElementFilter | Base class for filter functions |
▼Cstd::exception | STL class |
▼Cstd::logic_error | STL class |
▼Cstd::invalid_argument | STL class |
CSBMLConstructorException | Exceptions thrown by some libSBML constructors |
CSBMLExtensionException | Exception used by package extensions |
CXMLConstructorException | Exceptions thrown by some libSBML constructors |
CFbcPkgNamespaces | fbc
SBMLNamespaces extension for the package |
CFormulaTokenizer_t | Tracks the state of tokenizing a formula string |
CL3ParserSettings | Controls the behavior of the Level 3 formula parser |
CLayoutPkgNamespaces | layout
SBMLNamespaces extension for the package |
CList | Simple, plain, generic lists |
CModelCreator | MIRIAM-compliant data about a model's creator |
CModelHistory | MIRIAM-compliant data about a model's history |
CQualPkgNamespaces | qual
SBMLNamespaces extension for the package |
CRDFAnnotationParser | MIRIAM-compliant RDF annotation reader/writer |
▼CSBase | SBML's SBase class, base class of most SBML objects |
CAssociation | fbc
Proposed representation of gene associations |
CBoundingBox | layout
A bounding box for an item in a diagram |
CCompartment | An SBML compartment, where species are located |
CCompartmentType | A compartment type in SBML Level 2 |
CConstraint | An SBML constraint, for stating validity assumptions |
CCurve | layout
A curve connecting elements in a diagram |
CDefaultTerm | qual
The default result of a Transition |
CDelay | A delay on the time of execution of an SBML event |
CDimensions | layout
Spatial dimensions of a 2D or 3D shape |
CEvent | A discontinuous SBML event |
CEventAssignment | An assignment to a variable by an SBML event |
CFluxBound | fbc
Max or min value for a reaction flux |
CFluxObjective | fbc
An objective function for a flux |
CFunctionDefinition | A user-defined function in an SBML model |
CFunctionTerm | qual
A function term |
CGeneAssociation | fbc
Proposed annotation for gene associations |
▼CGraphicalObject | layout
Base class of objects that store layouts |
CCompartmentGlyph | layout
A glyph for an SBML compartment |
CGeneralGlyph | layout
A glyph for miscellaneous items |
CReactionGlyph | layout
A glyph for an SBML reaction |
CReferenceGlyph | layout
Connection between an object and a glyph |
CSpeciesGlyph | layout
A glyph for an SBML species |
CSpeciesReferenceGlyph | layout
A glyph for an SBML species reference |
CTextGlyph | layout
A glyph for a text label |
CInitialAssignment | An SBML initial assignment, evaluated once only |
CInput | qual
The input to a QualitativeSpecies |
CKineticLaw | The rate expression for an SBML reaction |
CLayout | layout
The layout of a diagram of an SBML model |
▼CLineSegment | layout
Representation of a line |
CCubicBezier | layout
A Cubic Bézier smooth curve |
▼CListOf | Parent class for libSBML's "ListOfXYZ" classes |
CListOfCompartmentGlyphs | layout
A list of CompartmentGlyph objects |
CListOfCompartments | A list of Compartment objects |
CListOfCompartmentTypes | A list of CompartmentType objects |
CListOfConstraints | A list of Constraint objects |
CListOfDeletions | comp
A list of Deletion objects |
CListOfEventAssignments | A list of EventAssignment objects |
CListOfEvents | A list of Event objects |
CListOfExternalModelDefinitions | comp
A list of ExternalModelDefinition objects |
CListOfFluxBounds | fbc
A list of FluxBound objects |
CListOfFluxObjectives | fbc
A list of FluxObjectives |
CListOfFunctionDefinitions | A list of FunctionDefinition objects |
CListOfFunctionTerms | qual
A list of FunctionTerm objects |
CListOfGeneAssociations | fbc
A list of GeneAssociation objects |
CListOfGraphicalObjects | layout
A list of GraphicalObject objects |
CListOfInitialAssignments | A list of InitialAssignment objects |
CListOfInputs | qual
A list of Input objects |
CListOfLayouts | layout
A list of Layout objects |
CListOfLineSegments | layout
A list of LineSegment objects |
CListOfModelDefinitions | comp
A list of ModelDefinition objects |
CListOfObjectives | fbc
A list of Objective objects |
CListOfOutputs | qual
A list of Output objects |
▼CListOfParameters | A list of Parameter objects |
CListOfLocalParameters | A list of LocalParameter objects |
CListOfPorts | comp
A list of Port objects |
CListOfQualitativeSpecies | qual
A list of QualitativeSpecies objects |
CListOfReactionGlyphs | layout
A list of ReactionGlyph objects |
CListOfReactions | A list of Reaction objects |
CListOfReferenceGlyphs | layout
A list of ReferenceGlyph objects |
CListOfReplacedElements | comp
A list of ReplacedElement objects |
CListOfRules | A list of Rule objects |
CListOfSpecies | A list of Species objects |
CListOfSpeciesGlyphs | layout
A list of SpeciesGlyph objects |
CListOfSpeciesReferenceGlyphs | layout
A list of SpeciesReferenceGlyph objects |
CListOfSpeciesReferences | A list of SpeciesReference objects |
CListOfSpeciesTypes | A list of SpeciesType objects |
CListOfSubmodels | comp
A list of Submodel objects |
CListOfTextGlyphs | layout
A list of TextGlyph objects |
CListOfTransitions | qual
A list of Transition objects |
CListOfUnitDefinitions | A list of UnitDefinition objects |
CListOfUnits | A list of Unit objects |
▼CModel | An SBML model |
CModelDefinition | comp
A model used in model composition |
CObjective | fbc
An objective function |
COutput | qual
The output from a QualitativeSpecies |
▼CParameter | An SBML parameter: a named symbol with a value |
CLocalParameter | A parameter inside an SBML reaction definition |
CPoint | layout
Representation of a point |
CPriority | The priority of execution of an SBML event |
CQualitativeSpecies | qual
Extension of Species |
CReaction | An SBML reaction between species in an SBML model |
▼CRule | Parent class for SBML rules in libSBML |
CAlgebraicRule | An SBML algebraic rule representing 0 = f(W) |
CAssignmentRule | An SBML assignment rule representing x = f(Y) |
CRateRule | An SBML rate rule representing dx/dt = f(Y) |
CSBMLDocument | Overall SBML container object |
▼CSimpleSpeciesReference | Abstract class for references to species in reactions |
CModifierSpeciesReference | A reference to an SBML modifier species |
CSpeciesReference | A reference to an SBML species in a reaction |
CSpecies | An SBML species – a pool of entities |
CSpeciesType | A species type in SBML Level 2 |
CStoichiometryMath | Stochiometry expressions in SBML Level 2 reactions |
CTransition | qual
A transition of a QualitativeSpecies |
CTrigger | The trigger expression for an SBML event |
CUnit | A single unit referenced in an SBML unit definition |
CUnitDefinition | A definition of a unit used in an SBML model |
CSBaseExtensionPoint | Base class for extending SBML components |
▼CSBasePlugin | Base class for extending SBML objects in packages |
▼CCompSBasePlugin | comp
Extension of SBase |
CCompModelPlugin | comp
Extension of Model |
CFbcModelPlugin | fbc
Extension of Model |
CFbcSpeciesPlugin | fbc
Extension of Species |
CLayoutModelPlugin | layout
Extension of Model |
CLayoutSpeciesReferencePlugin | layout
Extension of SpeciesReference |
CQualModelPlugin | qual
Extension of Model |
▼CSBMLDocumentPlugin | Base class for extending SBMLDocument in packages |
CCompSBMLDocumentPlugin | comp
Extension of SBMLDocument |
CFbcSBMLDocumentPlugin | fbc
Extension of SBMLDocument |
CLayoutSBMLDocumentPlugin | layout
Extension of SBMLDocument |
CQualSBMLDocumentPlugin | qual
Extension of SBMLDocument |
CSBMLDocumentPluginNotRequired | Base class for non-required Level 3 packages plug-ins |
▼CSBasePluginCreatorBase | Base class of SBasePluginCreator |
CSBasePluginCreator< SBasePluginType, SBMLExtensionType > | Template for SBasePlugin factory objects |
▼CSBMLConverter | Base class for SBML converters |
CCobraToFbcConverter | fbc
COBRA to SBML Level 3 'fbc' converter |
CCompFlatteningConverter | comp
"Flattens" a model, removing composition |
CFbcToCobraConverter | fbc
SBML Level 3 'fbc' to COBRA converter |
CSBMLFunctionDefinitionConverter | Converter to expand user-defined functions in-line |
CSBMLIdConverter | Converter for replacing object identifiers |
CSBMLInferUnitsConverter | Converter for inferring and setting parameter units |
CSBMLInitialAssignmentConverter | Converter that removes SBML initial assignments |
CSBMLLevelVersionConverter | Whole-document SBML Level/Version converter |
CSBMLLocalParameterConverter | Converter to turn local parameters into global ones |
CSBMLReactionConverter | Converter to replace reactions with SBML rate rules |
CSBMLRuleConverter | Converter that sorts SBML rules and assignments |
CSBMLStripPackageConverter | Converter that removes SBML Level 3 packages |
CSBMLUnitsConverter | Converts a model's existing units to SI units |
CSBMLConverterRegister< SBMLConversionType > | Template for SBML converter registry registrations |
CSBMLConverterRegistry | Registry of all libSBML SBML converters |
▼CSBMLExtension | Base class for SBML Level 3 package plug-ins |
CCompExtension | comp
Base extension class for the package |
CFbcExtension | fbc
Base extension class for the package |
CLayoutExtension | layout
Base extension class for the package |
CQualExtension | qual
Base extension class for the package |
CSBMLExtensionRegister< SBMLExtensionType > | Template class for extension package registration |
CSBMLExtensionRegistry | Registry where package extensions are registered |
▼CSBMLNamespaces | Set of SBML Level + Version + namespace triples |
CSBMLExtensionNamespaces< SBMLExtensionType > | Set of SBML Level + Version + namespace triples |
CSBMLReader | File and text-string SBML reader |
▼CSBMLResolver | comp
Base class for SBML resolvers |
CSBMLFileResolver | comp
Resolves documents stored on a file system |
CSBMLResolverRegistry | comp
Registry of all SBML resolvers |
CSBMLUri | comp
Utility class for handling URIs |
▼CSBMLValidator | Base class for SBML validators |
CSBMLInternalValidator | Basic SBML consistency checks and other validations |
CSBMLVisitor | Support class for operations on SBML objects |
CSBMLWriter | File and text-string SBML writer |
CSBO | Facilities for using the Systems Biology Ontology |
CSyntaxChecker | Methods for checking the validity of SBML identifiers |
CToken_t | A token from FormulaTokenizer_nextToken() |
▼CValidator | Entry point for SBML validation rules in libSBML |
CCompValidator | comp
Entry point for package validation |
CFbcValidator | fbc
Entry point for package validation |
CLayoutValidator | layout
Entry point for package validation |
CQualValidator | qual
Entry point for package validation |
CVConstraint | Helper class for SBML validators |
CXMLAttributes | A list of attributes on an XML element |
▼CXMLError | XML-level errors, warnings and other diagnostics |
CSBMLError | An error, warning or other diagnostic |
▼CXMLErrorLog | Log of diagnostics reported during XML processing |
CSBMLErrorLog | Log of diagnostics reported during processing |
CXMLInputStream | An interface to an XML input stream |
CXMLLogOverride | Facility for temporarily overriding error severities |
CXMLNamespaces | An XML Namespace |
CXMLOutputStream | Interface to an XML output stream |
▼CXMLToken | A token in an XML stream |
CXMLNode | A node in libSBML's XML document tree |
CXMLTriple | A qualified XML name |