Package org.jmol.api
Interface JmolPropertyManager
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PropertyManager
public interface JmolPropertyManager
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description boolean
checkPropertyParameter(String name)
Object
extractProperty(Object property, Object args, int pt, javajs.util.Lst<Object> v2, boolean isCompiled)
String
fixJMEFormalCharges(javajs.util.BS bsAtoms, String s)
String
getAtomData(String atomExpression, String type, boolean allTrajectories)
String
getChimeInfo(int tok, javajs.util.BS selectionSet)
String
getDefaultPropertyParam(int propertyID)
Map<String,Object>
getLigandInfo(Object atomExpression)
String
getModelCml(javajs.util.BS bs, int nAtomsMax, boolean addBonds, boolean doTransform, boolean allTrajectories)
String
getModelExtract(javajs.util.BS atomBitSet, boolean doTransform, boolean isModelKit, String type, boolean allTrajectories)
String
getModelFileInfo(javajs.util.BS visibleFramesBitSet)
Map<String,Object>
getModelInfo(Object atomExpression)
String
getPdbAtomData(javajs.util.BS bs, javajs.util.OC out, boolean asPQR, boolean doTransform, boolean allTrajectories)
String
getPdbData(int modelIndex, String type, javajs.util.BS bsA, Object[] parameters, javajs.util.OC oc, boolean addStructure)
Object
getProperty(String returnType, String infoType, Object paramInfo)
int
getPropertyNumber(String name)
void
setViewer(Viewer vwr)
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Method Detail
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setViewer
void setViewer(Viewer vwr)
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getDefaultPropertyParam
String getDefaultPropertyParam(int propertyID)
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getPropertyNumber
int getPropertyNumber(String name)
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checkPropertyParameter
boolean checkPropertyParameter(String name)
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extractProperty
Object extractProperty(Object property, Object args, int pt, javajs.util.Lst<Object> v2, boolean isCompiled)
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getModelFileInfo
String getModelFileInfo(javajs.util.BS visibleFramesBitSet)
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getChimeInfo
String getChimeInfo(int tok, javajs.util.BS selectionSet)
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getModelExtract
String getModelExtract(javajs.util.BS atomBitSet, boolean doTransform, boolean isModelKit, String type, boolean allTrajectories)
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getPdbAtomData
String getPdbAtomData(javajs.util.BS bs, javajs.util.OC out, boolean asPQR, boolean doTransform, boolean allTrajectories)
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getPdbData
String getPdbData(int modelIndex, String type, javajs.util.BS bsA, Object[] parameters, javajs.util.OC oc, boolean addStructure)
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getModelCml
String getModelCml(javajs.util.BS bs, int nAtomsMax, boolean addBonds, boolean doTransform, boolean allTrajectories)
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