Class Slice

    • Field Detail

      • leftPlane

        final javajs.util.P4 leftPlane
      • middle

        final javajs.util.P4 middle
      • rightPlane

        final javajs.util.P4 rightPlane
      • angleXY

        float angleXY
      • anglefromZ

        float anglefromZ
      • position

        float position
      • thickness

        float thickness
      • boundBoxNegCorner

        final javajs.util.P3 boundBoxNegCorner
      • boundBoxPosCorner

        final javajs.util.P3 boundBoxPosCorner
      • boundBoxCenter

        final javajs.util.P3 boundBoxCenter
      • diagonal

        float diagonal
    • Constructor Detail

      • Slice

        Slice()
    • Method Detail

      • makePlane

        static void makePlane​(float length,
                              float angleXY,
                              float anglefromZ,
                              javajs.util.P4 result)
        Parameters:
        length - (float) length of vector from origin
        angleXY - (float) angle of vector projection in XY plane (radians)
        anglefromZ - (float) angle of vector from Z axis (radians)
        result - (Point4f) meeting the Jmol definition of a plane.
      • setSlice

        void setSlice​(float angleXY,
                      float anglefromZ,
                      float position,
                      float thickness,
                      javajs.util.P3 boundBoxCenter,
                      javajs.util.V3 boundBoxVec,
                      boolean useMolecular)
        Sets the right plane and left plane bounding a slice.
        Parameters:
        angleXY - (float)angle in radians from X-axis to projection in XY plane
        anglefromZ - (float)angle in radians from z-axis to vector
        position - (float) position from origin of slice center along vector in molecular units
        thickness - (float) thickness of slice in molecular units.
        boundBoxCenter - (Point3f) center of the boundbox in molecular coordinates
        boundBoxVec - (Vector3f) vector from the boundbox center to the most positive corner.
        useMolecular - (boolean) if true angles and positions are relative to the origin of the molecular coordinate system. If false angles and position are relative to the center of the boundbox, which is usually more intuitive for the vwr as this is typically close to the center of the viewed object.
      • getSlice

        Slice getSlice()
        Returns:
        returns this Slice
      • getMiddle

        javajs.util.P4 getMiddle()