Package org.jmol.shape
Class Mesh
- java.lang.Object
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- org.jmol.util.MeshSurface
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- org.jmol.shape.Mesh
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- Direct Known Subclasses:
DrawMesh
,IsosurfaceMesh
public class Mesh extends MeshSurface
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Field Summary
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Fields inherited from class org.jmol.util.MeshSurface
altVertices, bsDisplay, bsPolygons, bsSlabDisplay, bsSlabGhost, colix, colixBack, colorsExplicit, dataOnly, haveQuads, iA, iB, iC, isColorSolid, isDrawPolygon, isMerged, mat4, mergePolygonCount0, mergeVertexCount0, meshType, normalCount, normals, normalsTemp, normixCount, nSets, oabc, offset, P_CHECK, P_CONTOUR, P_EXPLICIT_COLOR, pc, pcs, pis, polygonCount0, SEED_COUNT, slabColix, slabMeshType, slabOptions, surfaceAtoms, surfaceSet, vc, vcs, vertexCount0, vertexSets, vertexSource, vs, vvs, vwr
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Constructor Summary
Constructors Constructor Description Mesh()
always use Mesh().mesh1(thisID, colix, index)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static boolean
checkWithin(javajs.util.T3 pti, javajs.util.Lst<javajs.util.P3> withinPoints, float withinDistance2, boolean isWithinNot)
void
clear(String meshType)
void
clearMesh(String meshType)
private void
flipLighting(int lighting)
javajs.util.P3[]
getBoundingBox()
(package private) Object
getInfo(boolean isAll)
protected float
getMinDistance2ForVertexGrouping()
javajs.util.V3[]
getNormals(javajs.util.T3[] vertices, javajs.util.P4 plane)
javajs.util.V3[]
getNormalsTemp()
javajs.util.P3[]
getOffsetVertices(javajs.util.P4 thePlane)
protected String
getRendering()
String
getState(String type)
SymmetryInterface
getUnitCell()
int
getVertexIndexFromNumber(int vertexIndex)
protected javajs.util.BS
getVisibleVBS()
javajs.util.BS
getVisibleVertexBitSet()
void
initialize(int lighting, javajs.util.T3[] vertices, javajs.util.P4 plane)
private void
invertNormixes()
Mesh
mesh1(Viewer vwr, String thisID, short colix, int index)
void
rotateTranslate(javajs.util.Quat q, javajs.util.T3 offset, boolean isAbsolute)
void
setLighting(int lighting)
short[]
setNormixes(javajs.util.V3[] normals)
void
setShowWithin(javajs.util.Lst<javajs.util.P3> showWithinPoints, float showWithinDistance2, boolean isWithinNot)
void
setTokenProperty(int tokProp, boolean bProp)
void
setTranslucent(boolean isTranslucent, float iLevel)
void
setVisibilityFlags(int n)
protected void
sumVertexNormals(javajs.util.T3[] vertices, javajs.util.V3[] normals)
protected static void
sumVertexNormals2(Mesh m, javajs.util.T3[] vertices, javajs.util.V3[] normals)
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Methods inherited from class org.jmol.util.MeshSurface
addPolygon, addPolygonC, addQuad, addTriangle, addTriangleCheck, addV, addVCVal, getFaces, getMeshSlicer, getResolution, getSlabColor, getSlabType, getSphereData, getSphericalInterpolationFraction, getVertices, invalidatePolygons, newMesh, resetSlab, setABC, setBoundingBox, setBox, setColix, setColixBack, setPolygonCount, setTranslucentVertices, slabBrillouin, slabPolygonsList
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Field Detail
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PREVIOUS_MESH_ID
public static final String PREVIOUS_MESH_ID
- See Also:
- Constant Field Values
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title
public String[] title
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meshColix
public short meshColix
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normixes
public short[] normixes
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lineData
public javajs.util.Lst<javajs.util.P3[]> lineData
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thisID
public String thisID
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isValid
public boolean isValid
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scriptCommand
public String scriptCommand
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colorCommand
public String colorCommand
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lattice
public javajs.util.P3 lattice
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symops
public javajs.util.M4[] symops
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symopNormixes
public short[][] symopNormixes
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visible
public boolean visible
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lighting
public int lighting
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colorType
public int colorType
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haveXyPoints
public boolean haveXyPoints
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diameter
public int diameter
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width
public float width
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ptCenter
public javajs.util.P3 ptCenter
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linkedMesh
public Mesh linkedMesh
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vAB
public javajs.util.V3 vAB
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vTemp
public javajs.util.V3 vTemp
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color
public int color
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useColix
public boolean useColix
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unitCell
public SymmetryInterface unitCell
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scale3d
public float scale3d
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index
public int index
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atomIndex
public int atomIndex
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modelIndex
public int modelIndex
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visibilityFlags
public int visibilityFlags
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insideOut
public boolean insideOut
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checkByteCount
public int checkByteCount
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normalsInverted
private boolean normalsInverted
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showContourLines
public boolean showContourLines
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showPoints
public boolean showPoints
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drawTriangles
public boolean drawTriangles
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fillTriangles
public boolean fillTriangles
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showTriangles
public boolean showTriangles
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frontOnly
public boolean frontOnly
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isShell
public boolean isShell
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isTwoSided
public boolean isTwoSided
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havePlanarContours
public boolean havePlanarContours
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bsTemp
protected javajs.util.BS bsTemp
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colorDensity
public boolean colorDensity
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cappingObject
public Object cappingObject
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slabbingObject
public Object slabbingObject
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volumeRenderPointSize
public float volumeRenderPointSize
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connectedAtoms
public int[] connectedAtoms
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isModelConnected
public boolean isModelConnected
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recalcAltVertices
public boolean recalcAltVertices
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symopColixes
public short[] symopColixes
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Method Detail
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setVisibilityFlags
public void setVisibilityFlags(int n)
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clear
public void clear(String meshType)
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clearMesh
public void clearMesh(String meshType)
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initialize
public void initialize(int lighting, javajs.util.T3[] vertices, javajs.util.P4 plane)
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setNormixes
public short[] setNormixes(javajs.util.V3[] normals)
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getNormals
public javajs.util.V3[] getNormals(javajs.util.T3[] vertices, javajs.util.P4 plane)
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setLighting
public void setLighting(int lighting)
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flipLighting
private void flipLighting(int lighting)
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invertNormixes
private void invertNormixes()
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setTranslucent
public void setTranslucent(boolean isTranslucent, float iLevel)
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sumVertexNormals
protected void sumVertexNormals(javajs.util.T3[] vertices, javajs.util.V3[] normals)
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sumVertexNormals2
protected static void sumVertexNormals2(Mesh m, javajs.util.T3[] vertices, javajs.util.V3[] normals)
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getMinDistance2ForVertexGrouping
protected float getMinDistance2ForVertexGrouping()
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getRendering
protected String getRendering()
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getOffsetVertices
public javajs.util.P3[] getOffsetVertices(javajs.util.P4 thePlane)
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setShowWithin
public void setShowWithin(javajs.util.Lst<javajs.util.P3> showWithinPoints, float showWithinDistance2, boolean isWithinNot)
- Parameters:
showWithinPoints
-showWithinDistance2
-isWithinNot
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checkWithin
public static boolean checkWithin(javajs.util.T3 pti, javajs.util.Lst<javajs.util.P3> withinPoints, float withinDistance2, boolean isWithinNot)
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getVertexIndexFromNumber
public int getVertexIndexFromNumber(int vertexIndex)
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getVisibleVertexBitSet
public javajs.util.BS getVisibleVertexBitSet()
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getVisibleVBS
protected javajs.util.BS getVisibleVBS()
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setTokenProperty
public void setTokenProperty(int tokProp, boolean bProp)
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getInfo
Object getInfo(boolean isAll)
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getBoundingBox
public javajs.util.P3[] getBoundingBox()
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getUnitCell
public SymmetryInterface getUnitCell()
- Returns:
- unitcell
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rotateTranslate
public void rotateTranslate(javajs.util.Quat q, javajs.util.T3 offset, boolean isAbsolute)
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getNormalsTemp
public javajs.util.V3[] getNormalsTemp()
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