Class MMCifValidationParser


  • public class MMCifValidationParser
    extends Object
    • Constructor Detail

      • MMCifValidationParser

        public MMCifValidationParser()
    • Method Detail

      • finalizeValidations

        public String finalizeValidations​(Viewer vwr,
                                          Map<String,​Integer> modelMap)
        Create property_xxxx for each validation category.
        Parameters:
        vwr -
        modelMap -
        Returns:
        loading note
      • getRna3dMap

        private SV getRna3dMap​(String addedData)
      • mapAtomResIDs

        private void mapAtomResIDs​(Map<String,​Integer> modelMap)
        Map all atom and residue unit ids to atom indexes
        Parameters:
        modelMap -
      • getModelAtomIndices

        private int[] getModelAtomIndices()
        prepare a list of starting atom indices for each model, adding one additional one to indicate 1 + last atom index
        Returns:
        array
      • setProperties

        private String setProperties​(javajs.util.Lst<Object> propList)
        Set property_xxx for atoms from list of name, data, modelIndex series.
        Parameters:
        propList -
        Returns:
        note string