# ChangeLog for sci-biology/samtools # Copyright 1999-2016 Gentoo Foundation; Distributed under the GPL v2 # (auto-generated from git log) *samtools-1.2 (09 Aug 2015) *samtools-1.1 (09 Aug 2015) *samtools-1.0-r1 (09 Aug 2015) *samtools-1.0 (09 Aug 2015) *samtools-0.1.19-r2 (09 Aug 2015) *samtools-0.1.12 (09 Aug 2015) 09 Aug 2015; Robin H. Johnson +files/samtools-0.1.19-buildsystem.patch, +files/samtools-1.0-buildsystem.patch, +files/samtools-1.1-buildsystem.patch, +files/samtools-1.2-buildsystem.patch, +metadata.xml, +samtools-0.1.12.ebuild, +samtools-0.1.19-r2.ebuild, +samtools-1.0.ebuild, +samtools-1.0-r1.ebuild, +samtools-1.1.ebuild, +samtools-1.2.ebuild: proj/gentoo: Initial commit This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson X-Thanks: Alec Warner - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring - wrote much python to improve cvs2svn X-Thanks: Rich Freeman - validation scripts X-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed 24 Aug 2015; Justin Lecher metadata.xml: Use https by default Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher 24 Aug 2015; Mike Gilbert metadata.xml: Revert DOCTYPE SYSTEM https changes in metadata.xml repoman does not yet accept the https version. This partially reverts eaaface92ee81f30a6ac66fe7acbcc42c00dc450. Bug: https://bugs.gentoo.org/552720 24 Sep 2015; Agostino Sarubbo samtools-1.0-r1.ebuild: amd64 stable wrt bug #525630 Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="amd64" 24 Jan 2016; Michał Górny metadata.xml: Replace all herds with appropriate projects (GLEP 67) Replace all uses of herd with appropriate project maintainers, or no maintainers in case of herds requested to be disbanded. 24 Jan 2016; Michał Górny metadata.xml: Set appropriate maintainer types in metadata.xml (GLEP 67) 27 Mar 2016; David Seifert samtools-0.1.12.ebuild: Trim DESCRIPTION Package-Manager: portage-2.2.28 27 Mar 2016; David Seifert samtools-0.1.19-r2.ebuild: Trim DESCRIPTION * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28 27 Mar 2016; David Seifert samtools-1.0.ebuild: Trim DESCRIPTION * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28 27 Mar 2016; David Seifert samtools-1.0-r1.ebuild: Trim DESCRIPTION * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28 27 Mar 2016; David Seifert samtools-1.1.ebuild: Trim DESCRIPTION * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28 27 Mar 2016; David Seifert samtools-1.2.ebuild: Trim DESCRIPTION * Add sub-slot operator for 'sys-libs/ncurses' dependency Package-Manager: portage-2.2.28 *samtools-0.1.20 (27 Mar 2016) 27 Mar 2016; David Seifert +files/samtools-0.1.20-buildsystem.patch, +samtools-0.1.20.ebuild: Version bump to 0.1.20 * EAPI=6 * samtools will be slotted with SLOT="legacy", in order to be able to install applications that rely on the old monolithic library. Package-Manager: portage-2.2.28 27 Mar 2016; David Seifert samtools-0.1.20.ebuild: Add elog message discouraging direct use Package-Manager: portage-2.2.28 *samtools-0.1.20-r1 (27 Mar 2016) 27 Mar 2016; David Seifert files/samtools-0.1.20-buildsystem.patch, -samtools-0.1.20.ebuild, +samtools-0.1.20-r1.ebuild: Move to SLOT="0.1-legacy" for future legacy versions Package-Manager: portage-2.2.28 *samtools-1.3 (28 Mar 2016) 28 Mar 2016; David Seifert +files/samtools-1.3-buildsystem.patch, +files/samtools-1.3-ncurses.patch, +samtools-1.3.ebuild: version bump to 1.3, to match htslib * EAPI=6 * Added modern AX_WITH_CURSES that works with pkg-config * Fixed incorrect symlinks for libbam.so Package-Manager: portage-2.2.28 *samtools-0.1.20-r2 (09 Apr 2016) 09 Apr 2016; David Seifert -samtools-0.1.20-r1.ebuild, +samtools-0.1.20-r2.ebuild: Remove lua dep, fix perl shebangs Package-Manager: portage-2.2.28 *samtools-1.3-r1 (10 Apr 2016) 10 Apr 2016; David Seifert -samtools-1.3.ebuild, +samtools-1.3-r1.ebuild: Remove lua dep, fix perl shebangs Package-Manager: portage-2.2.28 *samtools-0.1.20-r3 (03 Oct 2016) 03 Oct 2016; David Seifert -samtools-0.1.20-r2.ebuild, +samtools-0.1.20-r3.ebuild: Use 'python-single-r1' instead of 'python-r1' Package-Manager: portage-2.3.1